Map Library πŸ—Ίοƒ

All map data is being hosted on the Open Science Framework

Initialization Maps

These maps consist of all analyses from the HippoMaps release paper. This includes:

  • histology

  • ex-vivo 9.4T MRI

  • 3T and 7T structural MRI

  • 3T and 7T resting-state functional MRI (rsfMRI)

  • task-based MRI (Mneumonic similarity task and Episodic memory task)

  • iEEG abnd power maps

  • morphology (derived with high detail from histology, or stnadard detail from MRI)

Tutorial Checkpoints

These files are needed to run the tutorials, if useCheckpoints=True. Since most of the β€œheavy lifting” such as preprocessing, sampling data to surfaces, and in the case of task-fMRI, gitting GLMs to timeseries data are already saved in these checkpoints, each tutorial should execute fast!

Note also that tutorials can be easily outfitted to run on new, locally-stored data instead, in case you want to apply similar analyses to your own data!

Share your data

If you have mapped interesting data to hippocampal surfaces, consider sharing it as well! Several projects have already been shared:

  • 7T perfusion imaging paper

  • 3D Polarized Light Imaging deep extracted features paper

The best way to share your data is to message the Community

Can I share volumetric data?

Yes! in most cases, it is straightforward to map volumetric data to surfaces by running HippUnfold. In some cases, you even be able to skip this by mapping directly to pre-generated surfaces in space-MNI152, which can be found here <https://github.com/khanlab/hippunfold-templateflow>